Index

Symbols

--append-file <append_file> openpathsampling-append command line option --cv <cv> openpathsampling-append command line option --engine <engine> openpathsampling-append command line option openpathsampling-md command line option openpathsampling-visit-all command line option --ensemble <ensemble> openpathsampling-md command line option --extra-steps <extra_steps> openpathsampling-equilibrate command line option --init-conds <init_conds> openpathsampling-equilibrate command line option openpathsampling-pathsampling command line option --init-frame <init_frame> openpathsampling-md command line option openpathsampling-visit-all command line option --log <log> openpathsampling command line option --multiplier <multiplier> openpathsampling-equilibrate command line option --network <network> openpathsampling-append command line option --nsteps <nsteps> openpathsampling-md command line option openpathsampling-pathsampling command line option --output-file <output_file> openpathsampling-equilibrate command line option openpathsampling-md command line option openpathsampling-pathsampling command line option openpathsampling-visit-all command line option --save-tag <save_tag> openpathsampling-append command line option --scheme <scheme> openpathsampling-append command line option openpathsampling-equilibrate command line option openpathsampling-pathsampling command line option

--state <state> openpathsampling-visit-all command line option --table <table> openpathsampling-contents command line option --tag <tag> openpathsampling-append command line option --volume <volume> openpathsampling-append command line option -a openpathsampling-append command line option -e openpathsampling-md command line option openpathsampling-visit-all command line option -f openpathsampling-md command line option openpathsampling-visit-all command line option -m openpathsampling-equilibrate command line option openpathsampling-pathsampling command line option -n openpathsampling-md command line option openpathsampling-pathsampling command line option -o openpathsampling-equilibrate command line option openpathsampling-md command line option openpathsampling-pathsampling command line option openpathsampling-visit-all command line option -s openpathsampling-visit-all command line option -t openpathsampling-equilibrate command line option openpathsampling-pathsampling command line option

_

__init__() (paths_cli.OpenPathSamplingCLI method) (paths_cli.param_core.AbstractLoader method) (paths_cli.param_core.Argument method) (paths_cli.param_core.GetByName method) (paths_cli.param_core.GetByNumber method) (paths_cli.param_core.GetOnly method) (paths_cli.param_core.GetOnlyNamed method) (paths_cli.param_core.GetOnlySnapshot method) (paths_cli.param_core.GetPredefinedName method) (paths_cli.param_core.Getter method) (paths_cli.param_core.OPSStorageLoadNames method) (paths_cli.param_core.OPSStorageLoadSingle method) (paths_cli.param_core.Option method) (paths_cli.param_core.StorageLoader method) (paths_cli.plugin_management.CLIPluginLoader method) (paths_cli.plugin_management.FilePluginLoader method) (paths_cli.plugin_management.NamespacePluginLoader method)

A

AbstractLoader (class in paths_cli.param_core)

Argument (class in paths_cli.param_core)

C

CLIPluginLoader (class in paths_cli.plugin_management)

F

FilePluginLoader (class in paths_cli.plugin_management)

G

GetByName (class in paths_cli.param_core) GetByNumber (class in paths_cli.param_core) GetOnly (class in paths_cli.param_core)

GetOnlyNamed (class in paths_cli.param_core) GetOnlySnapshot (class in paths_cli.param_core) GetPredefinedName (class in paths_cli.param_core) Getter (class in paths_cli.param_core)

I

INPUT_FILE openpathsampling-append command line option openpathsampling-contents command line option openpathsampling-equilibrate command line option openpathsampling-md command line option openpathsampling-pathsampling command line option openpathsampling-visit-all command line option

M

module paths_cli.commands.append paths_cli.commands.contents paths_cli.commands.equilibrate paths_cli.commands.pathsampling paths_cli.commands.visit_all

N

NamespacePluginLoader (class in paths_cli.plugin_management)

O

openpathsampling command line option --log <log> openpathsampling-append command line option --append-file <append_file> --cv <cv> --engine <engine> --network <network> --save-tag <save_tag> --scheme <scheme> --tag <tag> --volume <volume> -a INPUT_FILE openpathsampling-contents command line option --table <table> INPUT_FILE openpathsampling-equilibrate command line option --extra-steps <extra_steps> --init-conds <init_conds> --multiplier <multiplier> --output-file <output_file> --scheme <scheme> -m -o -t INPUT_FILE openpathsampling-md command line option --engine <engine> --ensemble <ensemble> --init-frame <init_frame> --nsteps <nsteps> --output-file <output_file> -e -f -n -o INPUT_FILE

openpathsampling-pathsampling command line option --init-conds <init_conds> --nsteps <nsteps> --output-file <output_file> --scheme <scheme> -m -n -o -t INPUT_FILE openpathsampling-visit-all command line option --engine <engine> --init-frame <init_frame> --output-file <output_file> --state <state> -e -f -o -s INPUT_FILE OpenPathSamplingCLI (class in paths_cli) OPSStorageLoadNames (class in paths_cli.param_core) OPSStorageLoadSingle (class in paths_cli.param_core) Option (class in paths_cli.param_core)

P

paths_cli.commands.append module paths_cli.commands.contents module paths_cli.commands.equilibrate module

paths_cli.commands.pathsampling module paths_cli.commands.visit_all module

S

StorageLoader (class in paths_cli.param_core)